Not sure where to start?
Manual
Source on Github
Examples
  • NHEJ (Non-homologous end joining)
  • Multiple alleles
  • Base-editors
  • HDR (Homology directed repair)
  • Batch mode

CRISPResso2

Analysis of genome editing outcomes from deep sequencing data

Not sure where to start?
Manual
Source on Github
Examples
  • NHEJ (Non-homologous end joining)
  • Multiple alleles
  • Base-editors
  • HDR (Homology directed repair)
  • Batch mode

Experimental design

Sample name
Fastq file R1
Fastq file R2
Amplicon
sgRNA
Alignment


Base editing

Quantification window



HDR

Exon specification

Quality filtering and trimming






By clicking the submit button, I agree to use CRISPResso2 in accordance with Partners' Terms and Conditions.

For analysis of amplicon pools, WGS data, and comparing multiple conditions, command line utilities for running CRISPResso2 on your machine or cluster are available at: https://github.com/pinellolab/CRISPResso2.